Zomniverse Bioinformatics

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Uploads are private and securely tied to your Zomniverse account. Sign in, then select the local file again.

Your datasets remain private and associated with your account.
ZAR dataset workspace

My datasets & analyses

Only your signed-in account can list, download, or delete these files. They are not published on the web. Zomniverse server administrators can access server storage for maintenance.

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Welcome to Zomniverse

Zomniverse is a modular world of knowledge where ideas, tools, and learning systems connect into a navigable universe. Explore structured domains, discover new concepts, and interact with intelligent tools designed to make complex knowledge easier to understand.

ZAR Calculator v1

Zomniverse AI Research

Query scientific knowledge across multiple research databases.

Use the ZAR engine to search literature, explore research entities, and retrieve structured knowledge from APIs such as PubMed, arXiv, and OpenAlex through natural language queries.

MARSS entry point

Start Analysis

Choose where your RNA-seq source comes from.

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Choose a data source
Drop an RNA-seq matrix here or click to browse CSV, TSV, TXT or Excel Dropbox, OneDrive, Google Drive & iCloud files work here. No download needed.

Enter Research without a dataset →

Knowledge Library

Enter Zomniverse’s growing scientific knowledge library.

Explore Zomniverse’s growing collection of scientific articles, books, technical documentation, tutorials, research analyses, and system architecture.

Structured publicationsVersioned research notes, technical documentation and PDFs.
Concept explorationUse ZAR to inspect connected concepts within each document.
Research collectionsPublic resources plus private collections for approved collaborators.
Open Knowledge Library
Try asking ZAR
Compute City
  • complex scientific expression
  • normalize sequencing yield
  • log2 fold-change
  • confidence interval margin
  • expected false discoveries
  • reads per gene estimate
Research
  • AI-driven multi-omics biomarkers for precision oncology clinical translation
  • metastatic melanoma resistance mechanisms to immune checkpoint inhibitors
  • single-cell RNA-seq tumor microenvironment analysis in cancer immunotherapy
  • spatial transcriptomics biomarkers for melanoma progression and metastasis
  • CRISPR functional genomics screens for cancer drug resistance discovery
  • machine learning models for predicting response to cancer immunotherapy
Concepts
  • RNA-seq
  • batch effects
  • gene expression
WordNet Dictionary
  • phenotype
  • lineage
  • inference
  • annotation
  • classification
  • metastasis
System Codes
  • NO_INPUT_DATA
  • FILE_READER_EMPTY_DATASET
  • GBTOX_INVALID_STRUCTURE